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Written By
Simran Bhatia -
Approved By
Sonika Rawat -
Updated on
September 8th, 2025 -
Read Time
8 minutes
Are you struggling with a slow Outlook mailbox? When Cleanup Tools cannot completely fix your messages, old items, and disk space issues, it reduces productivity and results in crashes and Outlook instability. This guide provides the best ways to solve the Outlook cleanup not working issue for free and with an Outlook Duplicate Remover Tool. It helps take back control of your mailbox, reduce lag, and again offer quick and efficient email handling to professionals.
User Query:
“The ‘CleanUp’ button in my Microsoft Outlook isn’t working anymore. I click it to remove duplicate emails from a conversation, but no messages are deleted. It just seems broken or halted. Can anyone resolve why my Outlook Cleanup is not working, and how I can fix it with ease?”
Outlook has some great built-in tools that help you maintain your mailbox size and performance. These are often called Cleanup Tools, including:
Feature Name | Function |
Mailbox Cleanup | Searches for large files, old items, and allows you to archive or empty deleted items or conflict folders |
AutoArchive | Automatically move or delete old items based on the specified time period. |
Conversation CleanUp | Deletes duplicate messages in a conversation to lower the overall size of the email |
Clutter/Focused Inbox | Identifies the crucial emails to prioritize while moving the less-important emails into a Clutter or other folder. |
When any of the above feature fails to remove duplicate emails in Outlook, it can be due to several reasons, as discussed below.
Ranging from issues with the system, Outlook profile, to the PST/OST files, everything leads to Outlook issues. These are briefly explained as follows:
Furthermore, note that the Outlook Cleanup Tool is just a convenient feature for MS users. It’s not an actual de-duplication tool. This is because it only targets duplicates in email threads and not those created by:
Moving ahead, let’s find out the topmost ways that enable you to fix the error and resume work efficiently.
There are various ways to troubleshoot the issue with the Outlook cleanup. Here, we will explore each one of them one by one.
Corrupted or damaged Outlook PST/OST files are a common issue. When Outlook cleanup not working, use the Inbox Repair Tool:
For 2019/2016/M365: C:\Program Files (x86)\Microsoft Office\root\Office16 For 2013 and earlier: C:\Program Files (x86)\Microsoft Office\Office15 |
Note: Repeat the process until no more errors are repeated.
Limitation: The process is too time-consuming and works only for small and basic error fixes.
Note: This process is only a temporary solution. It helps you simply archive the data when the “Outlook cleanup not removing duplicates” issue occurs.
Limitation: AutoArchive fails if the size of the PST file exceeds the Outlook limit, which is 50 GB for modern PST. Also, custom settings may override global settings and demand manual sync.
If your Outlook cleanup not working, then some add-ins may be problematic, causing unexpected interruptions.
Limitation: If you disable add-ins, some Outlook functionality is reduced, and this process is time-consuming. Moreover, it has no guarantee since it’s just a trial-and-error solution.
Limitation: This method can be complex, especially for non-tech users, since it needs POP/IMAP configurations.
If the issue still hasn’t gone away, try any of these ways to eliminate the issue for free.
In Legacy Outlook:
In Modern Outlook:
Note: If you have lots of time, then you can manually search for duplicates with Subject or other details and clean them up.
Limitation:
SysInfo Outlook Duplicate Remover is one of the excellent solutions when the manual method fails. It is cost-effective, saves time, and eliminates a lot of manual hassle. Additionally, it is a complete solution to declutter large Outlook mailboxes in bulk, and that too with 100% accuracy. Moreover, the data integrity is preserved, and you can even save data in new PSTs.
Example Case:
“A consulting firm had slow mailboxes because the Outlook Cleanup not Removing Duplicates issue arose across shared PST archives. By using Outlook Duplicate Items Remover, the consultant was able to scan all the PSTs, detect true duplicates, and remove them all in a single action. This reduced mailbox size by a significant ratio in a matter of hours.”
Useful Steps for Effortless Conversion
Note: You can download report once the process completes. If you do not want to install the software, Get in Touch with our Chat Support Tech Experts.
Outlook Cleanup features that are not functioning properly are a productivity killer. These are most likely a symptom of a glitch, corruption, or conflict, and not permanently broken functionality. Start with something simple, like Safe Mode or resetting the view when your Outlook cleanup not working. For more critical problems, the best solution is to repair your data file or create a new profile. But these also work in limited cases. For a permanent fix, use the professional tool and don’t let your cluttered mailbox interrupt your workflow.
Ans- It is probably because of misconfigured or overridden add-ins. Also, it can be due to corrupted files and conflicting server issues. In any case, using the solutions given above, you can fix the error to resume the work.
Ans- No, they are both completely different. Clutter is an older feature that moves low-priority emails from your Inbox to a Clutter folder. Outlook Clean Up is a manual tool for deleting duplicate/multiple messages within a conversation. If your Outlook Clutter is not functioning properly, it only affects Clutter, and it is typically related to server-side settings in Office 365.
About The Author:
Simran Bhatia is a technical content writer engaged in writing clear, concise, and SEO-optimized content. With a background in computer science and a passion for writing, I thrive to deliver complex technical content in simple layman terms.
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